PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_10433A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB
Protein Properties Length: 275aa    MW: 28895 Da    PI: 4.8262
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_10433AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.4e-091460140
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqc 40
                               rg W++eEd++l + ++++G g+W+++++            Rt+ +c
  Oropetium_20150105_10433A 14 RGLWSPEEDDKLMNHIAKYGHGCWSSVPKLADelnseliSDRTAGHC 60
                               788*************************9988766666666666666 PP

2Myb_DNA-binding27.29e-0963872247
                               T-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47
                               ++W+ Ia+ ++ gRt++++k++w++y
  Oropetium_20150105_10433A 63 NRWSQIAAQLP-GRTDNEVKNFWNSY 87
                               35*********.************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.404992IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-13960IPR009057Homeodomain-like
SuperFamilySSF466891.72E-141284IPR009057Homeodomain-like
SMARTSM007171.4E-151390IPR001005SANT/Myb domain
PfamPF002498.8E-81460IPR001005SANT/Myb domain
CDDcd001677.23E-111788No hitNo description
PfamPF002498.3E-76387IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-126389IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MARRAAGPKK KLRRGLWSPE EDDKLMNHIA KYGHGCWSSV PKLADELNSE LISDRTAGHC  60
TMNRWSQIAA QLPGRTDNEV KNFWNSYIKK KLRQRGIDPA THKPLAVVEA SSSSCRTASA  120
AVFMDPEAAE LILSSAGLHM PPPPPESYMM MYGGRSSADD GGADPVACSD GSLSLSSGCN  180
QTADDDLEAA AAGGYLDPVD DALVPAAAVV LPSVSSSSTL NSMAGLSTAT ATTTTTDNSS  240
GFESTPSYST DHLASYQQGG QCIYGGDDVN KDAAV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4700666e-41AF470066.1 Sorghum bicolor P-type R2R3 Myb protein (Myb27) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958441.11e-64PREDICTED: myb-related protein Zm1-like
TrEMBLA0A0D3Q1Y61e-69A0A0D3Q1Y6_9POAL; MYB transcription factor
STRINGSi029872m5e-63(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30923385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.14e-39myb domain protein 50